A Performance Analysis of ABINIT on a Cluster System

نویسندگان

  • Torsten Hoefler
  • Rebecca Janisch
  • Wolfgang Rehm
چکیده

in which the Hamilton operator Ĥtot describes all interactions within the system. The solution Φ, the wavefunction of the system, describes the state of all N electrons and M atomic nuclei, and Etot is the total energy of this state. Usually, the problem is split by separating the electronic from the ionic part by making use of the Born-Oppenheimer approximation [1]. Next we consider the electrons as independent particles, represented by one-electron wavefunctions φi. Density functional theory (DFT), based on the work of Hohenberg and Kohn [2] and Kohn and Sham [3], then enables us to represent the total electronic energy of the system by a functional of the electron density n(r):

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Improving the parallel scaling of ABINIT

This work presents the results of a three week stay of T.H. at the High Performance Systems Department of the CINECA Institute in Bologna, Italy. The main goals of the short project to understand and parallelize the core functions of the application ABINIT have been achieved. A huge share of the time consuming part of the code has been parallelized efficiently and scales well on modern supercom...

متن کامل

Low Overhead Ethernet Communication for Open MPI on Linux Clusters

This paper describes the basic concepts of our solution to improve the performance of Ethernet Communication on a Linux Cluster environment by introducing Reliable Low Latency Ethernet Sockets. We show that about 25% of the socket latency can be saved by using our simplified protocol. Especially, we put emphasis on demonstrating that this performance benefit is able to speed up the MPI level co...

متن کامل

Parallel scaling of Teter’s minimization for Ab Initio calculations

We propose a parallelization scheme for the conjugate gradient method by Teter et. al. and report a detailed analysis of its scalability. We use MPI collective operations exclusively to take advantage of optimized collective implementations with possible hardware support. Our parallel conjugate gradient calculation can be applied in addition to the already implemented parallelism in the applica...

متن کامل

Transforming the high-performance 3d-FFT in ABINIT to enable the use of non-blocking collective operations

This article describes the implementation of the three-dimensional Fast Fourier Transformation in the application ABINIT and investigates a possible way to enhance parallel performance by leveraging communication/computation overlap. We propose code transformations that enable the use of non-blocking collective operations which are implemented by an MPI extension library (LibNBC). The transform...

متن کامل

7 SCIENTIFIC HIGHLIGHT OF THE MONTH: ”Harnessing the power of modern package management tools for a large Fortran-90-based project: the mutation of ABINIT” Harnessing the power of modern package management tools for a large Fortran-90-based project: the mutation of ABINIT

ABINIT is a Fortran 90 free software application that allows the atomic-scale simulation of properties of matter, thanks to Density Functional Theory and Many-Body Perturbation Theory. It is used by more than thousand individuals, who enjoy the wide spectrum of properties that ABINIT allows to compute easily. Several dozen developers contribute to ABINIT from different parts of the world. In 20...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2006